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1 vote
0 answers
220 views

Image processing pipeline for segmenting cell nuclei

I'm seeking a better image processing pipeline to essentially segment cell nuclei in fluorescence images. So far, I've tried a bunch of morphological operations, e.g. modifying this scikit-image ...
lanery's user avatar
  • 176
0 votes
1 answer
99 views

How does reconstruction function relate to watershed segmentation?

I'm trying to understand how watershed work by reading The Morphological Approach to Segmentation: The Watershed Transformation S. Beucher and F. Meyer This document mentions the reconstruction ...
Tuan Nguyen Dinh's user avatar
3 votes
1 answer
100 views

Find the Mid Point of a Worm / Chain Like Object

I have a video of worm-like objects which move. They can move in a straight line, they can rotate in circles, they can move in a serpentine/winding/sinuous way. I need to track them. I already have ...
JalfredP's user avatar
  • 135
0 votes
0 answers
237 views

Fill Incomplete Holes in 3D Image of Corals

I'm trying to analyse a series of CT scans of coral samples, but am fairly new to this sort of image processing. The problem I've hit is that a lot of the coral is hollow (in the images), and even ...
chris_huh's user avatar
6 votes
2 answers
1k views

Segmentation of overlapping noisy parallelograms in a binary image

Edited. Previously this question was named "Segmentation of overlapping pulses in a binary spectrogram" and it was stated in slightly different way. I'm apologise to those users, who were affected by ...
Nikolai Popov's user avatar
2 votes
1 answer
850 views

Gap Filling Contours / Lines

I have the following image: and I would like to fill in its contours (i.e. I would like to gap fill the lines in this image). I have tried a morphological closing, but using a rectangular kernel of ...
Alex Rothberg's user avatar
0 votes
2 answers
679 views

OCR (optical character recognition) for Indian languages - segmentation

Can any one help me in how to extract a table from the whole document image and segment it? I have done segmentation for the document image which has only text by using the projection profile. So ...
Bhavana's user avatar
  • 11
4 votes
4 answers
15k views

Best way to remove unwanted region from image

I am finding the techniques to remove unwanted regions (small dots) from image. I have an image that includes object and some unwanted region (small dots- see first image). I want to remove it. Hence, ...
John's user avatar
  • 585