Let $$\dot{x} = Ax+Bu$$ $$y = Cx + Du$$ be a linear ODE with $x(0)=0$. Here, I am assume $A$ is invertible.
As you can see, the relation $$H:u(.) \mapsto y(.),$$ where $(u(.),y(.))$ is a solution to the ODE above, forms an LTI system. If I set $u(t) = e^{st}$, for some $s \in \mathbb{C} - \text{spec}(A)$, then the output is $$y(t) = -Ce^{At}(s I - A)^{-1}B) + (C(s I - A)^{-1} B + D)e^{st}.$$
Now, my understanding of eigenfunctions is that if $f(.) \not = 0$ satisfies $Hf = \lambda f$, for some $\lambda \in \mathbb{C}$, then $f$ is an eigenfunction. This is clearly not the case for $u(t) = e^{st}$. Could someone clear up my mis-understanding?