More notes:
It's reasonable to approximate the jerk (third derivative) function as a linear combination of non-overlapping step and impulse functions. For a typical input series, it looks something like this (the blue vs. red is my current attempt at filtering; this is mainly just to convey an idea of the shape):
Here is a typical acceleration profile:
Here is a typical velocity profile (the climb at the start is what causes all the trouble; the physics of the problem make the system prefer to start moving at close to infinite velocity right from the get-go, but practical considerations get in the way):
For those who are interested, here is the raw tab-delimited data series from which the central-difference derivatives were approximated to produce the above graphs:
x 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.510544858 4.529570168 4.548595479 4.567620789 4.5866461 4.60567141 4.624696721 4.643722031 4.662747342 4.681772652 4.700797963 4.719823273 4.738848584 4.757873894 4.776899204 4.795924515 4.814949825 4.833975136 4.853000446 4.872025757 4.891051067 4.910076378 4.929101688 4.948126999 4.967152309 4.98617762 5.00520293 5.024228241 5.043253551 5.062278862 5.081304172 5.100329483 5.119354793 5.138380104 5.157405414 5.176430725 5.195456035 5.214481346 5.233506656 5.252531967 5.271557277 5.290582588 5.309607898 5.328633209 5.347658519 5.36668383 5.38570914 5.404734451 5.423759761 5.442785072 5.461810382 5.480714657 5.497626044 5.514537431 5.531448818 5.548360206 5.565271593 5.58218298 5.599094367 5.616005754 5.632917141 5.649828528 5.666739915 5.683651302 5.700562689 5.717474077 5.734385464 5.751296851 5.768208238 5.785119625 5.802031012 5.818942399 5.835853786 5.852765173 5.869676561 5.886587948 5.903499335 5.920410722 5.937322109 5.954233496 5.971144883 5.98805627 6.004967657 6.021879044 6.038790432 6.055701819 6.072613206 6.089524593 6.10643598 6.123347367 6.140258754 6.157170141 6.174081528 6.190992916 6.207904303 6.22481569 6.241727077 6.258638464 6.275549851 6.292461238 6.309372625 6.326284012 6.343195399 6.360106787 6.377018174 6.393929561 6.410840948 6.427752335 6.444663722 6.461575109 6.478486496 6.495397883 6.512309271 6.529220658 6.546132045 6.563043432 6.579954819 6.596866206 6.613777593 6.63068898 6.647600367 6.664511754 6.681423142 6.698334529 6.715245916 6.732157303 6.74906869 6.765980077 6.782891464 6.79783353 6.807698506 6.817563482 6.827428457 6.837293433 6.847158409 6.857023385 6.866888361 6.876753336 6.886618312 6.896483288 6.906348264 6.91621324 6.926078215 6.935943191 6.945808167 6.955673143 6.965538119 6.975403095 6.98526807 6.995133046 7.004998022 7.014862998 7.024727974 7.034592949 7.044457925 7.054322901 7.064187877 7.074052853 7.083917828 7.093782804 7.10364778 7.113512756 7.123377732 7.133242707 7.143107683 7.152972659 7.162837635 7.172702611 7.182567587 7.192432562 7.202297538 7.212162514 7.22202749 7.231892466 7.241757441 7.251622417 7.261487393 7.271352369 7.281217345 7.29108232 7.300947296 7.310812272 7.320677248 7.330542224 7.3404072 7.350272175 7.360137151 7.370002127 7.379867103 7.389732079 7.399597054 7.40946203 7.419327006 7.429191982 7.439056958 7.448921933 7.45668417 7.46311785 7.46955153 7.47598521 7.48241889 7.488852569 7.495286249 7.501719929 7.508153609 7.514587289 7.521020969 7.527454649 7.533888329 7.540322008 7.546755688 7.553189368 7.559623048 7.566056728 7.572490408 7.578924088 7.585357768 7.591791447 7.598225127 7.604658807 7.611092487 7.617471594 7.622952136 7.628432678 7.63391322 7.639393762 7.644874304 7.650354846 7.655835389 7.661315931 7.666796473 7.672277015 7.677757557 7.683238099 7.688718641 7.694199183 7.699679725 7.705160268 7.71064081 7.716121352 7.721601894 7.727082436 7.732562978 7.73804352 7.743524062 7.749004605 7.754485147 7.759965689 7.765446231 7.770926773 7.776407315 7.781828236 7.786267475 7.790706714 7.795145953 7.799585192 7.804024432 7.808463671 7.81290291 7.817342149 7.821781388 7.826220627 7.830659866 7.835099105 7.839538344 7.843977584 7.848416823 7.852856062 7.857295301 7.86173454 7.866173779 7.870613018 7.875052257 7.879491497 7.883930736 7.888369975 7.892809214 7.897248453 7.901687692 7.906126931 7.91056617 7.915005409 7.919444649 7.923883888 7.928323127 7.932762366 7.937201605 7.941640844 7.946080083 7.950519322 7.954958561 7.959397801 7.96383704 7.968276279 7.972715518 7.977154757 7.980384921 7.982851165 7.985317409 7.987783653 7.990249897 7.992716141 7.995182385 7.997648629 8.000114873 8.002581117 8.005047361 8.007513605 8.009979849 8.012446092 8.014912336 8.01737858 8.019844824 8.022311068 8.024777312 8.027243556 8.0297098 8.032176044 8.034642288 8.037108532 8.039574776 8.04204102 8.044507264 8.046973508 8.049439752 8.051905996 8.05437224 8.056838484 8.059304728 8.061633119 8.063606114 8.065579109 8.067552105 8.0695251 8.071498095 8.07347109 8.075444085 8.07741708 8.079390076 8.081363071 8.083336066 8.085309061 8.087282056 8.089255051 8.091228046 8.093201042 8.09410447 8.094332124 8.094559777 8.09478743 8.095015084 8.095242737 8.09547039 8.095698043 8.095925697 8.09615335 8.096381003 8.096608657 8.09683631 8.097063963 8.097291616 8.09751927 8.097746923 8.097974576 8.09820223 8.098429883 8.098657536 8.098885189 8.099112843 8.099340496 8.099568149 8.099795803 8.100023456 8.100251109 8.100478762 8.100706416 8.100934069 8.101161722 8.101389376 8.101617029 8.101844682 8.102072336 8.102299989 8.102527642 8.102755295 8.102982949 8.103210602 8.103438255 8.103665909 8.103893562 8.104121215 8.104348868 8.104576522 8.104804175 8.105031828 8.105259482 8.105487135 8.105714788 8.105942441 8.106170095 8.106397748 8.106625401 8.106853055 8.107080708 8.107308361 8.107536014 8.107763668 8.107991321 8.108218974 8.108446628 8.108674183 8.108899792 8.109120089 8.109331659 8.109531087 8.109714959 8.10987986 8.110022376 8.110139158 8.11022965 8.110297009 8.110344649 8.110375986 8.110394434 8.110403409 8.110406324 8.110406324