Questions tagged [scipy]
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159
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Simulation of Lock-In Amplification in Python makes no sense
I would like to simulate a basic lock-in amplification for post-processing some data. I wrote a basic Python script for this purpose but the output of the lock-in amplification does not seem to make ...
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25
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3D Convolution with sum of multiple 2D Convolution operation
Probably this is a simple question, but I quite don't understand the reasons why I can replicate a 3D convolution operation with the sum of multiple 2D convolution operations.
Is it a property of ...
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0
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51
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Spectrogram of x,y,z data from accelerometer
Using scipy.signal.spectrogram for creating spectrogram and matplotlib's pcolormesh for plotting.
I'm working on a project where I'm using a spectrogram to visualize the frequencies of the ...
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1
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60
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How to determine multiple Periodicities present in Timeseries data?
My objective is to detect all kinds of seasonalities and their time periods that are present in a timeseries waveform.
I'm currently using the following dataset:
https://www.kaggle.com/rakannimer/air-...
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28
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How can to obtain the transfer function of a bandpass digital filter? [duplicate]
I've been asked to: create a bandpass filter amplifier in python, determine the transfer function, graph the bode diagram, and print the highcut frequency, lowcut frequency, the bode constant and the ...
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1
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34
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Fast Fourier transformation of discrete linear line function in Python using scipy.fft [closed]
Consider a time series dataset generated by a linear function
$$y = a \cdot n, \; n=0,1,...,N$$
According to this reference (entry 308 in the table for one-dimensional functions), the analytical ...
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13
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Creating 60s strips from ecg signal recording ( .bat ) file and give it a label as per the datapoint present in it
I am working with https://physionet.org/content/mitdb/1.0.0/ dataset where we have 48 ecg signal files.
Each recording is 30 minutes long and I Want to create 60s strips and give it a label. ie based ...
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2
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45
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Scipy tf2zpk doesn't return zeros
I have the following transfer function:
$$H(z) =\frac{\alpha z}{(z-(1-\alpha))}$$
I'd like to find zeros and poles of it by scipy.signal.tf2zpk:
...
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0
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1
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62
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How to set the "widths" parameter for continuous wavelet transform using Morlet wavelets? (scipy.signal.cwt)
I'm trying to use scipy.signal.cwt() to do a time-frequency decomposition of neural data. However, I don't completely understand the "widths" parameter.
I ...
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150
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Help on audio filter with FFT on python
I need to take a .wav audio file that's noisy and filter out some noise. I have to do it using Fourier Transform. After some days researching and experimenting, I finally made a working function, the ...
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32
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0
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1
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68
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Remez function equivalency between Matlab and Scipy
I've read the similar question Find the equivalent of this python remez specs in C++ remez or Matlab firpm, which describes a different problem.
In Matlab, I have following ...
2
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2
answers
147
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How to implement cascaded biquad transfer functions in Python/SciPy
I am trying to implement in python/Scipy the biquad filter with the following S-domain transfer function:
$$
H(s)=\frac{w_0^{2N-1}(s+w_z)}{[s^2+(w_0/Q)s+w_0^2]^N}
$$
My problem here is that because of ...
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2
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1
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86
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Why the convolution of the impulse response doesn't match the system's output?
If you define an LTI system sys in scipy, you may conveniently feed an input x to it to get its output ...
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1
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1
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160
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Can someone explain why signal.freqz() generates a different phase in the frequency fresponse than scipy.signal.dfreqresp()?
I have been using scipy to analyze filter performance for a single-pole IIR filter, and I noticed a disagreement between the phase in the outputs of the freqz() function compared to the output of the ...
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0
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18
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Issues on EEG PSD feature extraction using signal.welch
I am new to EEG signal processing and I am having some issues on calculating PSD using scipy.signal.welch. I am trying to implement a function to extract PSD features. The input of this function is a ...
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1
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43
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How to select parameters suitable parameters for a spectrogram
I have a limited background in DSP but I need to generate a spectrogram of an electrocardiography (ECG). I am using the scipy.signal.spectrogram and I need to set ...
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3
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184
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Role of window length and overlap in uncertainty principle?
I am trying to predict epilepsy using spectrograms and a convolutional neural network.
So far I have achieved a validation accuracy of 86% which i feel like is pretty good. Lots of the papers doing ...
1
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1
answer
61
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Measure Frequency-Response of Sensor using a Signalsource and Reference-Sensor
Cheers, I want to measure the frequency response of an acceleration sensor.
I have:
A signal source (device similar to a loudspeaker that shakes the acceleration sensor), of which I do NOT know the ...
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1
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1
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128
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Scipy FFT and Numpy FFT disagree on pulse train spectrum?
I am doing an FFT on a series of pulses. The series is one pulse of amplitude 1 every 7 days over a total of 367 days. The code below is what I run:
...
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33
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How to design function for Random Decrement technique in python and implement the function?
I was looking into a technique called Random decrement technique from the following links/articles:
How can I use Random Decrement Method to convert a non-stationary
signal into a decay function ...
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1
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77
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spectrogram of a (strongly) downsampled file
I downsampled an audio file to a very low sampling rate, 48hz.
This is because I stored some information in the file, that are not really audio information but the audio format was convenient to use.
...
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64
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High pass filter with specific cut-off frequency
The situation
I am trying to apply a high pass filter to a black&white image to enhance the texture by keeping the high frequencies. The goal is to filter from a specific frequency value obtained ...
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1
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1
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86
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IIR design: SciPy CMSIS-DSP coefficient format
How do you reconcile Scipy.signal's IIR design with CMSIS-DISP's API? Scipy.signal outputs in one of 3 forms:
Numerator/denominator
Pole Zero
Second-Order-Sections.
CMSIS requires an array of length ...
- 113
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2
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97
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Find the equivalent of this python remez specs in C++ remez or Matlab firpm
I want to start with that I am quite new in this community, so if this question does not belong here, please point me to the right place. Thank you!
Background
I am learning and writing a half-band ...
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2
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0
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27
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Help with setting up transfer function correct format
I have a transfer function as:
H(s) = R / (sRC + 1)
V is the output and I is the input so we can write:
V(s) = I(s)*H(s)
Now the thing is that, I want to obtain I(t) for the given V(t). So I write:
I(...
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1
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85
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Evaluate filter matlab function on scipy
I want to reproduce the result given by filter() MATLAB function using scipy.signal functions. The result is not consistent:
Matlab example:
...
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-1
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1
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257
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How to specify parameters in scipy.stft to reproduce published analysis
I am starting a project on this Keggle dataset containing EEG registrations (sampled at 128 Hz) of several subjects. What I am really interested in is the final ...
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146
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Unexpected results of deconvolution with scipy.deconvolve
Below I have plotted the signal (Lifetime decay) I am trying to deconvolve from a known impulse response function (IRF), as well as the IRF itself. I'm using scipy.signal.deconvolve.
Please note for ...
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10
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Rectified Distribution
I have a vibration signal data with 2500 data points. I want to make a rectified distribution from this signal as appear in figure 4 here to calculate the rectified skewness of the signal. From ...
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1
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1k
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How to calculate the envelope of a complex signal using python [closed]
I used the scipy hilbert function to calculate the envelope of my signal. The problem is that the signal is complex, so it throws an error when I use Hilbert function. I tried to just use the real ...
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2
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623
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Are scipy second-order Gaussian derivatives correct?
For an edge detection algorithm, I need to compute second-order derivatives of an image, and I do this with use of Gaussian derivatives. I assumed that the ...
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3
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378
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scipy.signal.spectrogram() - how to handle gaps in the timeseries data
Looking at the magnitude of variable stars - the dataset is from here:
https://dogwood.physics.mcmaster.ca/Cepheid/URL/MW/BD-10d4669.html
The magnitude plot:
...
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1
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341
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scipy.signal.spectrogram() with noverlap=nperseg-1, what are the possible side-effects?
I'm using a simulated data set which can be downloaded from the link in the fist paragraph on this page (it's an Excel file):
https://www.analyticbridge.datasciencecentral.com/forum/topics/challenge-...
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1
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78
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scipy.signal.stft temporal resolution
Using the STFT function from scipy.signal has produced unexpected results for me.
I am performing an STFT on 10 seconds of data, sampled at 25,000 Hz.
I am using STFT settings of nperseg=256 and ...
1
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1
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647
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scipy cross-correlation: interpretation
I want to compute the phase shift between two 1-D signals of same frequency, but before I'm trying to compute the time shift between. The cross-correlation function seems to be ideal for that but I'm ...
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2
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1
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831
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Deconvolution with Python in real life
I have measured a signal which is convolved with the profile of the measuring apparatus. Now I want to remove this contribution to get the "real" signal. I am trying to do this with Python. ...
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1
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67
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narrow band filtering of a signal that is sampled at high frequency
I have a signal that is sampled at 2KHz. The frequency band of interest is from 1/60 Hz to 1 Hz, and I want the final signal to be downsampled to 10 Hz.
What is the best way to do this?
I read that ...
2
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2
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364
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Invertible low-pass (Butterworth) filter in python (scipy)?
Question
Is there an invertible low-pass filter built into scipy.signal (or other python package)? If so, what is it? If not, why not (is there something ...
2
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1
answer
45
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Getting error while performing upsampling of an audio signal processing using low pass filter in python
I want to perform upsampling of an audio signal introducing zeros between samples to create a longer signal with factor of N=2. The sampling rate is 44100Hz, time = 5sec.
...
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0
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1
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56
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Apply FFT to positive spiky signal
I have a signal that looks like this
It has regularly occurring peaks 50 units apart, and offset from 0 by approximately 20. I thought I could apply the DTFT to this signal and extract the period (...
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1
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348
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Compare two Fourier transforms of two signals by calculating the coherence
My overall aim is to compare the edges of two images by comparing their Fourier Transforms (FFT) and to calculate one number as a key performance indicator that describes how much they are similar to ...
0
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1
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55
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Problem wih (diverging?) digital IIR filter for an online acquisition system
I am trying to plot windows of acquired data from an LSL-compatible system. For the example below, let's consider 1-second window of a 64 channel EEG system. In practice, I use shorter 0.2-window, but ...
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368
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How to correctly set the zi parameter (initial condition) for a scipy IIR filter
Let's take as an example an IIR filter using the 'sos' output, as this is what I use the most. To apply a bandpass filter, you can do:
...
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2
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1
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157
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Difference between MATLAB zp2sos and python zpk2sos functions
I am trying to port some code from MATLAB to python. The goal is to use Butterworth filter (4th order, bandpass) API and convert it to second-order sections. I get the same output between MATLAB and ...
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1
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84
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Obtaining real numbers from FFT with same length as original signal
In this article the real valued time domain signal is transformed to the frequency domain to extract some features like mean or variance.
But after transform to the frequency domain I calculate ...
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0
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322
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Trying to implement matlab pwelch function in python using scipy welch
I am trying to port the statistics toolbox function pwelch from matlab into python, but when I am trying to implement it using scipy.signals.welch, it does not return the same results as it does in ...
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60
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Periodogram/PSD from FFT amplitude
I have performed a STFT for signals and obtained the amplitude through
...
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274
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Boundary effects with scipy.fftconvolve after convolution
I am having some numerical error in my code that propagates continuously, and has to do with the implementation of convolutions in Python; this is kind of struggling my progress and I would really ...
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1
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2k
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Scalograms in python
I am reading this paper to learning basic concepts of dsp and I want to reproduce the following scalogram of a test signal (fig 4.2 of the paper):
It has been produced from the discretization of the ...
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