I would like to convert the blobs into circles of uniform diameter. it doesn't really matter what diameter but they need to be circles and uniform. Here is what I am looking for.
I am working with tiff sequences in ImageJ. I tried erosion and dilation. I tried Ultimate point to reduce to a point and then dilate up but that creates a square. I tried distance map but didn't get very far. Although i am pretty sure distance map is the way to go. None of my current approaches are satisfactory.
If I could do
#pseudo-code if area(blob) > x then make circle(diameter=y) else remove blob
would be even better.
If anyone has a solution using ImageJ or Python SciPy or even R, please let me know. I would very much appreciate that. Thanks.