Suppose I want to average a signal $s(t)$ which consists of several spectral components without any DC offset. I sample $M$ points in the time domain. I am interested in the power spectrum which I get from an FFT (so far). Because my SNR per single measurement is $<< 1$, I have average $N$ runs together. Typically, the SNR is around 0.005 for one trace. This works as expected if the signal is coherent from run to run (further down $\xi=0 \,\forall\, \mathrm{runs}$) and if I average > 200'000 measurements. The reason for the small SNR is coming from discretization (between 0 and 1) (thing e.g. of photon counting).
Now I encounter the situation that between single measurements a sign flip of the signal that I want to measure can occur. I don’t have the information when this occurs. However, I know it is only a sign flip. Besides this, the signal is "coherent" (a little bit like BPSK), thus \begin{equation} s(t) = A(t) \cos(\omega_\mathrm{RF} t + \phi + \xi\, \pi) + \mathrm{noise} \qquad \mathrm{with}\; \xi \in \{0,1\}. \end{equation} If possible, it would be also great to recover ($\phi \mod \pi$).
If I average in the time domain, I get obviously no signal. To solve this, I can average incoherently meaning I average the power spectra or magnitude spectra instead of the time domain data. However, this will lead to a scaling of $\mathrm{SNR}\propto N^{1/4}$ instead of $\mathrm{SNR}\propto N^{1/2}$. $A(t)$ is expected to be a slowly varying and decaying function e.g. an exponential decay $A(t)=\hat{A}e^{-t/\tau}$.
In the real signal, I have multiple spectral components at different frequencies $\omega_{\mathrm{RF},i}$, thus e.g. \begin{equation} s(t) = \hat{A}_1 \ \cos(\omega_1 t + \phi_1 + \xi_1\, \pi) + \hat{A}_2 \ \cos(\omega_2 t + \phi_2 + \xi_2\, \pi) + ... +\mathrm{noise} \qquad \mathrm{with}\; \xi_i \in \{0,1\}. \end{equation} The sign flips occur without any correlation between the spectral components thus $\xi_1$ and $\xi_2$ are independent.
Can I do better or is this a fundamental limit? Is there a way to get a more favorable SNR scaling compared to the $N^{1/4}$? It seems like I don’t use the information, that only a sign flip can occur.
Thanks!
Peter